Soybean Functional Network

        A database of Soybean Functional Gene Network (SoyFGN) and miRNA Functional Network (SoymiRFN)


                         Functional Gene Network (FGN) | miRNA Network (miRFN)
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SoyModule

SoyModule


SoyModule allows users to retrieve, display, analysis, and download the bilayer functional modules of soybean miRNA-gene bilayer network in different hierarchical levels, identified by the proposed Psuedo-3D clustering algorithm. The modules at the 6th level (L6) were proved to be the optimal partition.

Show/Hide Overview

Level

Number of modules

Average gene numbers

Average miRNA numbers

Average cohesiveness

Average clustering coefficient

Modularity

L1

1497

83

6

0.6572

0.7363

0.003634

L2

825

104

10

0.6576

0.7472

0.00568

L3

452

137

18

0.6524

0.7831

0.008778

L4

250

188

32

0.6077

0.7763

0.011304

L5

149

252

52

0.5232

0.7610

0.011766

L6

100

333

72

0.4570

0.7464

0.013191

L7

80

389

83

0.4156

0.7369

0.012491

L8

72

425

87

0.4041

0.7347

0.012477

L9

71

431

87

0.4036

0.7343

0.012844

   
Module level        Module NO.
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