Soybean miRNA Functional Network

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This site will no longer be updated and maintained from now on. The current services will continue to be provided and updated at the new database: SoyFN. We apologize for the inconvenience.

Statistics

 
Statistics

 

      1. Information of miRNAs

         1. Sequence

           2. Genome coordinates

     2. Information of miRNA targets

         1. Predicted targets

           2. Target 3'-UTRs

     3. Pairwise functional similarity

         1. Heamap

           2. FS download (.txt)

    4. miRFN: miRNA functional network

         1. Global properties

           2. Degree distribution

           3. miRFN in Genome

    5. Visit Statistic


 
miRBase Release : 19
 

Section

Description

Number of hits

miRNA name

match the accession or ID of a hairpin precursor entry

506

Previous ID

match the previous ID of a hairpin precursor entry

29

Mature name

match the accession or ID of a mature miRNA sequence

555

Previous Mature ID

match the previous mature ID of a mature entry

61

Dead entry

match the accession or ID of a dead entry

0

Dead entry previous ID

match the accession or ID of a dead entry

0

Gene symbol

find miRNA entries based on gene symbols

0

Description

search miRNA entry description

0

Comments

search miRNA entry comments

0

PubMed ID

find miRNA entries based on literature reference PubMed ID

0

Literature reference

search title and authors of associated literature references

0

   
 

Download Coordinates
   



 
Genome Coordinates (Phytozome5.0)
Download Coordinates
   
   
   
   
     
Information of miRNA targets
 
The number of predicted target genes by three methods Download Targets
   


       
  Target 3'-UTR sequence (49942 in totall)
Download 3'-UTR
     
     
     
Information of pairwise miRNAs functional similarity
     
  Heatmap of Functional Similarity
Download full size
   
     
     
     
     
  Functional Similairity batch download
Download full size
   
     
     
     
miRNA Functional Network (miRFN)
     
  Global properties
   

Property

BP

MF

CC

Integration

Number of Nodes

462

454

512

472

Number of Edges

7858

8271

16813

7038

Cluster Coefficient

0.782

0.779

0.832

0.762

Connected components

13

15

5

11

Diameter

6

5

6

7

Radius

1

1

1

1

Centralization

0.503

0.467

0.511

0.487

Shortest paths

185394

162316

253520

193276

Characteristic path length

2.372

2.287

2.104

2.573

Avg. number of neighbors

34.017

36.436

65.676

29.822

Density

0.074

0.080

0.129

0.063

Heterogeneity

1.281

1.292

1.135

1.323

     
     
  Degree Distribution
   


Degree distributions and thier fitted models of four miRFNs


Joint degree distributions of four miRFNs


K-nearest neighbours and Pearson Correlation of degree (PCD) distributuon

     
     
  miRFN in Genome(of Integration)
   
     
 

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